PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757428.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 203aa    MW: 22392.2 Da    PI: 4.5651
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.6e-3881081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e+
  XP_009757428.1   8 SCGACKFLRRRCSNECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFALEQQVASLVEEI 102
                     6***********************9978******************************************************************9 PP

          DUF260  95 allkee 100
                     + + ++
  XP_009757428.1 103 EITANQ 108
                     998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4897109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-358105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAGPAGSSCG ACKFLRRRCS NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPLH  60
CRSEAAVTMS YEALARMQDP IYGCVGHIFA LEQQVASLVE EIEITANQMA FYAGEVPMEN  120
TINTLQFSLE CNNMNVGNNH VNHSITSLAH VNDTSANEAF ITQMNAELPE INGFDNLFSS  180
TFFDFDISDR VFDGLDLICT TNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757428.11e-151PREDICTED: LOB domain-containing protein 33-like
RefseqXP_016488257.11e-151PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS83e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7TLQ36e-71D7TLQ3_VITVI; Putative uncharacterized protein
STRINGVIT_13s0019g02060.t012e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-55LOB domain-containing protein 33