PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025087-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 145aa    MW: 16594.6 Da    PI: 5.6841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025087-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-162263348
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                   y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  NNU_025087-RA 22 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAALAYDL 63
                   88******.**********865...5******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-252078No hitNo description
SMARTSM003801.8E-252185IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-182179IPR016177DNA-binding domain
PROSITE profilePS5103220.2052179IPR001471AP2/ERF domain
PfamPF008475.6E-102263IPR001471AP2/ERF domain
PRINTSPR003674.1E-92233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-252278IPR001471AP2/ERF domain
PRINTSPR003674.1E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEDQPQLIPR NLKRRSRQST IYLGVRRRPW GRYAAEIRNP YTKERHWLGT FDTAEEAALA  60
YDLSSISFSG IERARTNFYY PFLTPPPPPP PPPPPPPTPP PPPPTPELEE IDHQYPELGN  120
IDDDESMTIA AILQSFRHPN TFSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1522701564Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446878.14e-54ethylene-responsive transcription factor LEP
SwissprotQ3E7032e-28ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3N7I8W08e-53A0A3N7I8W0_POPTR; Uncharacterized protein
STRINGXP_002527132.14e-51(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.17e-30ERF family protein