PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024739-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 77aa    MW: 8883.69 Da    PI: 4.6236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024739-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.8e-122253132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg+WT eEd++l+++v+ +G g+W++ ar+ g
    NNU_024739-RA 22 RGPWTVEEDLILLNYVANHGEGRWNSLARCSG 53
                     89***************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2521771IPR017930Myb domain
SuperFamilySSF466892.76E-91853IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-121854IPR009057Homeodomain-like
PfamPF002496.0E-92251IPR001005SANT/Myb domain
CDDcd001671.02E-52451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDANGRSCSS GTQSEEEIDL RRGPWTVEED LILLNYVANH GEGRWNSLAR CSGRVEAWDW  60
FESQEFLARS KVHEQNK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270853.14e-28PREDICTED: transcription factor MYB108
SwissprotQ9FGY37e-17MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A1U8B4421e-26A0A1U8B442_NELNU; transcription factor MYB108
STRINGXP_010270853.12e-27(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-19myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]