PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024231-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 272aa    MW: 30840.7 Da    PI: 5.4657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024231-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20126175255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +++GV++++ +grW+AeIrdp+    r kr +lg+++t+eeAa  +++a+ +l+g
  NNU_024231-RA 126 RFRGVHQRP-WGRWAAEIRDPT----RgKRLWLGTYDTPEEAATVYDNAAIRLRG 175
                    79*******.**********84....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.0E-5717268IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.20E-30125183No hitNo description
Gene3DG3DSA:3.30.730.104.5E-28126183IPR001471AP2/ERF domain
SMARTSM003805.3E-34126189IPR001471AP2/ERF domain
PROSITE profilePS5103223.143126183IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21126183IPR016177DNA-binding domain
PfamPF008476.7E-13126175IPR001471AP2/ERF domain
PRINTSPR003679.4E-9127138IPR001471AP2/ERF domain
PRINTSPR003679.4E-9149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNPTLCRCRN CHSELSSALC RLKFSEHVVT TSKLLQAHKA NEKSTTSGSS SPQTCRIRQK  60
VVRIIFTDVD ATDSSDDEEE NEILRRVKRH VHEIGIDATA KVGYEVSVKK RKLRVPEEAD  120
EHRQKRFRGV HQRPWGRWAA EIRDPTRGKR LWLGTYDTPE EAATVYDNAA IRLRGPDAVT  180
NIPTFTRAET VVKGGELLTA TATCPTSVLR YDGQNSLDRF DNGDVDAFGF DIDLPLTLPD  240
IILPKTYFDE EELGEIDIDM DDFPLELEII RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19123183263ATERF1
3gcc_A1e-19123183263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244551.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046829e-56PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1U7ZA010.0A0A1U7ZA01_NELNU; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_010244551.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-38cytokinin response factor 4