PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023626-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 204aa    MW: 22130.5 Da    PI: 4.5796
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023626-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182979155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   + y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa a++ a++kl+g
  NNU_023626-RA 29 CPYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSLEAAVAYDDAARKLYG 79
                   68*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-123079IPR001471AP2/ERF domain
SMARTSM003804.5E-353093IPR001471AP2/ERF domain
PROSITE profilePS5103221.4963087IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-213087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-303188IPR001471AP2/ERF domain
PRINTSPR003678.7E-103142IPR001471AP2/ERF domain
CDDcd000186.84E-303189No hitNo description
PRINTSPR003678.7E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGKGEKRSPK RNSRKGCMRG KGGPENALCP YRGVRQRTWG KWVAEIREPN RGARIWLGTF  60
NTSLEAAVAY DDAARKLYGS SARLNLPELA TSPASCSPAI SLASGSTTTS SSSSSFPGLD  120
TSTSDSSKSF PASTDTEFTI NDLESQFTVE DLMKDNDERL MPNSNSDMEG GFWGNMALEL  180
PEWLEAPPVD SDFLTIGDIL GWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-173187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243654.11e-147PREDICTED: dehydration-responsive element-binding protein 2C-like
SwissprotQ8LFR23e-42DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
SwissprotQ9LQZ29e-43DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1U7YZK81e-146A0A1U7YZK8_NELNU; dehydration-responsive element-binding protein 2C-like
STRINGXP_010243654.11e-147(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]