PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022609-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 217aa    MW: 23396.4 Da    PI: 8.9387
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022609-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.7e-3732126381
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesssss 81 
                    ++k+++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt                   ss+s + ++ssss+
  NNU_022609-RA  32 PRKSSSRDRHTKVNGRGRRIRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpapsestptgvmppA-SSPSTSAPVSSSST 126
                    799************************************************************655444443333333221.11111112222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3036116IPR005333Transcription factor, TCP
PROSITE profilePS5136927.1253791IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGSELILRNS SQPGEQNTVS TRDVSKIQLT LPRKSSSRDR HTKVNGRGRR IRMPALCAAR  60
IFQLTRELGH RSDGETIEWL LRQAEPSIIA ATGTGTVPAP SESTPTGVMP PASSPSTSAP  120
VSSSSTSISS AIKARPVAAV PENHRVPTGF LAVSSFETAP PICRLDLCQP PVGLEFPSNG  180
YRHMPFTAML LQPTSEGEEQ PHPPPPPQQQ QEEVNKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241853.11e-156PREDICTED: transcription factor TCP11
SwissprotQ9SJK72e-41TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A1U7YVF81e-155A0A1U7YVF8_NELNU; transcription factor TCP11
STRINGXP_010241853.11e-155(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-37TCP family protein