PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021405-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 274aa MW: 30935.9 Da PI: 10.0631

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021405-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.3e-33	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtp+LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl NNU_021405-RA 25 KSRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 79 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-31	22	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.933	22	82	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.5E-24	25	80	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.42E-16	25	80	IPR009057	Homeodomain-like
Pfam	PF00249	5.8E-9	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-22	127	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MERRCGSYSY ETGVAVGVVL SRDPKSRLRW TPDLHDRFVD AVTKLGGPDK ATPKSVLRVM 60 GLKGLTLYHL KSHLQKYRLG KQAKKEANLE SRSKSSVSDG KADGHNHMDS SVISSSAPTQ 120 NNQEERKIAE TLRYQIEVQR RLQEQIEVQK KLQKRIEAQG KYLQAILEKA QKSLSTDRKC 180 PRRLEATGSQ LTDLSPSGFM TKLREDERKG EMMRKNLLND NHDSNIQRSS FQLYQEVGEA 240 KNKENMIEGD EGSSLFDLNV KGGYEFFGPK GSGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278794.1	0.0	PREDICTED: myb family transcription factor PHL11-like
Refseq	XP_010278795.1	0.0	PREDICTED: myb family transcription factor PHL11-like
TrEMBL	A0A1U8BBU7	0.0	A0A1U8BBU7_NELNU; myb family transcription factor PHL11-like
STRING	XP_010278794.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-65	G2-like family protein