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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_021405-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | G2-like | ||||||||
Protein Properties | Length: 274aa MW: 30935.9 Da PI: 10.0631 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.3 | 7.3e-33 | 25 | 79 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtp+LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl NNU_021405-RA 25 KSRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 79 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 22 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.933 | 22 | 82 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-24 | 25 | 80 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 8.42E-16 | 25 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-9 | 27 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-22 | 127 | 173 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MERRCGSYSY ETGVAVGVVL SRDPKSRLRW TPDLHDRFVD AVTKLGGPDK ATPKSVLRVM 60 GLKGLTLYHL KSHLQKYRLG KQAKKEANLE SRSKSSVSDG KADGHNHMDS SVISSSAPTQ 120 NNQEERKIAE TLRYQIEVQR RLQEQIEVQK KLQKRIEAQG KYLQAILEKA QKSLSTDRKC 180 PRRLEATGSQ LTDLSPSGFM TKLREDERKG EMMRKNLLND NHDSNIQRSS FQLYQEVGEA 240 KNKENMIEGD EGSSLFDLNV KGGYEFFGPK GSGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278794.1 | 0.0 | PREDICTED: myb family transcription factor PHL11-like | ||||
Refseq | XP_010278795.1 | 0.0 | PREDICTED: myb family transcription factor PHL11-like | ||||
TrEMBL | A0A1U8BBU7 | 0.0 | A0A1U8BBU7_NELNU; myb family transcription factor PHL11-like | ||||
STRING | XP_010278794.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 7e-65 | G2-like family protein |