PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021176-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 187aa    MW: 20161.5 Da    PI: 4.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021176-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-162270255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f t+e+Aa a++ a+++l+g
  NNU_021176-RA 22 IYRGIR-CR-SGKWVSEIREPRK---STRIWLGTFPTPEMAATAYDVAALALKG 70
                   69***9.55.6*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.10E-302180No hitNo description
PfamPF008471.3E-92170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-272279IPR001471AP2/ERF domain
SMARTSM003807.2E-312284IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-182279IPR016177DNA-binding domain
PROSITE profilePS5103220.3892278IPR001471AP2/ERF domain
PRINTSPR003676.6E-72334IPR001471AP2/ERF domain
PRINTSPR003676.6E-76080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MIVTSSAPGA SSHQPVAGKH PIYRGIRCRS GKWVSEIREP RKSTRIWLGT FPTPEMAATA  60
YDVAALALKG SDAVLNFPET VSSYPIPASA SPSDIRAAAA AAAASRLPKT ESIDDQPFSH  120
LGNVELDTDS NPPTSREEFI DEEALFDMPK LLVNMAEGML LSPPRMNPRT SDDSPENSDG  180
ESLWSYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151883368ATERF1
3gcc_A1e-151883368ATERF1
5wx9_A3e-151482676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278525.11e-135PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ905e-54ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8BN801e-133A0A1U8BN80_NELNU; ethylene-responsive transcription factor ERF026-like
STRINGXP_010278525.11e-134(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-44ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]