PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019826-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family G2-like
Protein Properties Length: 415aa    MW: 46450 Da    PI: 6.954
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019826-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.31.7e-3346100155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kprl+WtpeLHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYRl
  NNU_019826-RA  46 KPRLKWTPELHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRL 100
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.38143103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-3144101IPR009057Homeodomain-like
SuperFamilySSF466892.87E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2346101IPR006447Myb domain, plants
PfamPF002491.1E-104899IPR001005SANT/Myb domain
PfamPF143795.1E-24143189IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MYHHHHHHGK TSFPSSTMSI PPERHLFLQN GNGRGDTGLI LSTDAKPRLK WTPELHERFI  60
EAVNQLGGAD KATPKTVLKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANM GTNKNVAGDR  120
ISEASGALMS NTSPSSQTNK NLQISEAIQI QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ  180
SVLEKAQETL GRQNLGSVEF DAAKMQFPEL VSKVSAECLN STFPELKELQ GLCLCPQQTQ  240
KMQPTDCSVD SCLTSCEGSQ KDQEIHNIEV GLRPYQSSAS LGLKEIVDDS RIEQPEPTWG  300
EDLNENKMFS SSIGRDAERI MFPMQRSCSS LSTTSRVQGE NRNASSSFAE ARTKEGNEDD  360
SFLNQNSARR PVANLENDMS KGFRLPHLTA KLDLNTQEND STTHKQFDLN GFSWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276422.10.0PREDICTED: myb-related protein 2-like
RefseqXP_019055601.10.0PREDICTED: myb-related protein 2-like
SwissprotQ9SQQ91e-134PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1U8QBU90.0A0A1U8QBU9_NELNU; myb-related protein 2-like
STRINGXP_010276422.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-137G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]