PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019579-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 452aa    MW: 48726.3 Da    PI: 7.2233
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019579-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.8e-39742312135
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasec.. 73 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       +++   +  
  NNU_019579-RA  74 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnstfpdtpkqpsdekrpnasepRFNP---Aev 166
                    689*************************************************************99999998888777665544443333...133 PP

            TCP  74 .eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakararare.rtrekmriknk 135
                      + + s ++++++++ + +++a+s+ s++s+ s+l+l++ esr kar+rare   +ek r k+k
  NNU_019579-RA 167 eLETDPSYQQQQQQQHISLTKSACSSTSETSKGSVLSLSRsESRVKARERARErAAKEKEREKEK 231
                    555555566666666788899999999**************************666677666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-4175226IPR005333Transcription factor, TCP
PROSITE profilePS5136931.57776134IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.829207225IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEVDDIQPCK LSRIGNGRND TTKIGQKAGE QYQDEDDDDG EGRGGGCGSG GGGNDSGRLR  60
QWPASRIFRV SRASGGKDRH SKVLTAKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV  120
EWLIKAAADA IAELPSLNST FPDTPKQPSD EKRPNASEPR FNPAEVELET DPSYQQQQQQ  180
QHISLTKSAC SSTSETSKGS VLSLSRSESR VKARERARER AAKEKEREKE KEDTHAAHQQ  240
DVNHNSQSTS FTELLAAAAA ANDNGTSPTT SAQQNLGLSN FVLKPRHVPS SPMDYFGAGL  300
FGPASSRAHN SSGFSGQTHF GNPQQHSMAM QSPFSVTGDH PPELQQFSFL SDHLIPAAAA  360
AGNDYNLNFT ISSGLAGLNR GTLQSNSPSP LAHLQRFSSP VDGSNVPFFI GTAAPGAASV  420
ENHQFPAGFD ARLQLYYGDG CRHSDLKGKG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2381135155Putative transcription factor PCF6
5zkt_B1e-2381135155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275881.10.0PREDICTED: transcription factor TCP2
RefseqXP_010275883.10.0PREDICTED: transcription factor TCP2
SwissprotQ93V435e-82TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1U8B8D80.0A0A1U8B8D8_NELNU; transcription factor TCP2
STRINGXP_010275881.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-66TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]