PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018849-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 135aa    MW: 15363 Da    PI: 8.4498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018849-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19859256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr+++ +g+++AeIrdps    r  +r +lg+f  ae+Aa+a+++a+ +l+g+
  NNU_018849-RA  8 RYRGVRRRP-WGKYAAEIRDPS----RpgARLWLGTFENAEDAARAYDRAAFALRGH 59
                   6********.**********96....355**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-16867No hitNo description
Gene3DG3DSA:3.30.730.106.0E-31867IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-23867IPR016177DNA-binding domain
SMARTSM003805.0E-34872IPR001471AP2/ERF domain
PROSITE profilePS5103224.157866IPR001471AP2/ERF domain
PfamPF008472.4E-12859IPR001471AP2/ERF domain
PRINTSPR003671.0E-10920IPR001471AP2/ERF domain
PRINTSPR003671.0E-103248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MERGRDVRYR GVRRRPWGKY AAEIRDPSRP GARLWLGTFE NAEDAARAYD RAAFALRGHL  60
AILNFPNEHR LQSSSSAPST YLLSSSSSFS LTENIDKGSS STTGGEKVVF EFEYLDDRLL  120
EELLDSEEQN KRKKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-30811914114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274788.14e-95PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8BDQ41e-93A0A1U8BDQ4_NELNU; ethylene-responsive transcription factor ERF098-like
STRINGXP_010274788.12e-94(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-20ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]