PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018453-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 305aa    MW: 33339.2 Da    PI: 10.3328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018453-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ ++k++G g W+tI +          R+  ++k++w++ 
    NNU_018453-RA  5 KQKWTSEEEAALKAGIKKHGAGKWRTILKDPEfsgvlALRSNVDLKDKWRNM 56
                     79***********************************88***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.722161IPR017930Myb domain
SuperFamilySSF466898.61E-16273IPR009057Homeodomain-like
SMARTSM007173.0E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-14457IPR009057Homeodomain-like
PfamPF002497.1E-8555IPR001005SANT/Myb domain
CDDcd116604.34E-19657No hitNo description
SuperFamilySSF467851.69E-16120198IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.8E-15120192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.4E-13120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.411122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-7127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI KKHGAGKWRT ILKDPEFSGV LALRSNVDLK DKWRNMCVMA  60
NGWGSREKAR LALKRSQQIP KHDRNPMALS TVVQSDEEIV DAKPLAISGS DTLQIAGLKK  120
SASSRLDNLI LEAITNLKEP SGSNKTSIAL YIEDQCWAPP NFKRLLSAKL KFLTASGKLI  180
KVKRKYRIAP RSAFSDRRRS SGVLLLEGRQ RDSSRDEKDD IKLFSKSQID ADLSKMRSMT  240
AEEAAIAAAR AVAEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMMTL KGRNASKMVR  300
LSPST
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274393.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_010274394.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK44e-97TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1U8B1620.0A0A1U8B162_NELNU; telomere repeat-binding factor 1-like
STRINGXP_010274393.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-96telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]