PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018198-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 207aa    MW: 22854.1 Da    PI: 4.4327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018198-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-191565155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s ykGVr +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  NNU_018198-RA 15 SLYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 65
                   57*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-211574IPR016177DNA-binding domain
CDDcd000185.64E-291575No hitNo description
SMARTSM003803.6E-321679IPR001471AP2/ERF domain
PROSITE profilePS5103221.9181673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-291674IPR001471AP2/ERF domain
PfamPF008471.4E-111665IPR001471AP2/ERF domain
PRINTSPR003674.4E-101728IPR001471AP2/ERF domain
PRINTSPR003674.4E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVKPTTGKPA EKSDSLYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDTAE KAARAFDAAL  60
FCLRGCNAKF NFPDNPPDIP CGRSLTPPEI QAAAARFANG ENETHKAPPA QLRTQTDTLL  120
EYPSPSSVSD GGAPADSDVS IDWSFFDMLT TVGSEDSVSE FGAFSGFDDY SGDYFPAPAT  180
SVVDYEDENS GSGDYQYYPQ HSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15773572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273875.11e-153PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-59ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1U8AZQ11e-151A0A1U8AZQ1_NELNU; ethylene-responsive transcription factor ERF017-like
STRINGXP_010273875.11e-152(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]