PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017634-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 255aa    MW: 27683.7 Da    PI: 8.1165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017634-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.4e-16167215254
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                    ++ GV++++ +g+W+AeIrdp     r  r +lg++ taeeAak +++a+ +l+
  NNU_017634-RA 167 KFCGVWQRP-WGKWAAEIRDPA----RgVRLWLGTYYTAEEAAKVYDNAAIQLR 215
                    667******.**********82....36**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.83E-25166224No hitNo description
SuperFamilySSF541717.85E-17167224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-24167224IPR001471AP2/ERF domain
PROSITE profilePS5103219.928167224IPR001471AP2/ERF domain
SMARTSM003802.4E-26167230IPR001471AP2/ERF domain
PfamPF008474.7E-9168215IPR001471AP2/ERF domain
PRINTSPR003674.3E-7168179IPR001471AP2/ERF domain
PRINTSPR003674.3E-7190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLPKDIARFY GVILGSNCSF SSPTRPAAFT VCLVQLQECL HIIGIASINP RELGRLRGTT  60
TTIEAGSTVA QEKAVATLLN ISTSTPATVQ IATVTLYSLL IVDKYQLIMA PSGISSSLLS  120
TSFGTPTAIC YGGDYAGGWV FREWGCLSEA VGSRDFGGFI GFDDSKKFCG VWQRPWGKWA  180
AEIRDPARGV RLWLGTYYTA EEAAKVYDNA AIQLRVPNAM TTFATPPKAK QQIQVPTSSG  240
YDSFYCYLCY CDIGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-16166223159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-16166223462ATERF1
3gcc_A1e-16166223462ATERF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-28cytokinin response factor 2