PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016649-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 184aa    MW: 20536.1 Da    PI: 4.2787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016649-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-181362255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++  +g+WvAeIr+p   + r +r +lg+f+t  +Aa a++ a++kl+g
  NNU_016649-RA 13 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSRDAAIAYDSAARKLYG 62
                   69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-281272No hitNo description
SMARTSM003802.1E-311376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-301371IPR001471AP2/ERF domain
PROSITE profilePS5103221.6941370IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-211370IPR016177DNA-binding domain
PfamPF008472.5E-121362IPR001471AP2/ERF domain
PRINTSPR003674.6E-101425IPR001471AP2/ERF domain
PRINTSPR003674.6E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRGKGGPENA LCTYRGVRQR TWGKWVAEIR EPNRGARLWL GTFDTSRDAA IAYDSAARKL  60
YGKFAKLNLP ELWTEAESQA GSISESVPVP VPSSTTTTQQ AAESLLKVEP EMGSSSDGNN  120
LVEDGMEGIW RDMNLSLLPE IQEFPWMELP TTTMEFPVVM KDPGIWSQEL LDDTTGWNAL  180
ELPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-181470663ATERF1
3gcc_A9e-181470663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271525.11e-132PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1U8B6K51e-131A0A1U8B6K5_NELNU; dehydration-responsive element-binding protein 2D-like
STRINGXP_010271525.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-42ERF family protein