PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015711-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 235aa    MW: 25911.6 Da    PI: 9.5768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015711-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-193280355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++GVr ++ +gr++AeIrdp +   ++r++lg+f++ae+Aa+a++aa+++l+g
  NNU_015711-RA 32 FRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEDAARAYDAAARNLRG 80
                   8*******.**********743...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-123180IPR001471AP2/ERF domain
SMARTSM003803.6E-393194IPR001471AP2/ERF domain
PROSITE profilePS5103223.4333188IPR001471AP2/ERF domain
CDDcd000189.43E-193190No hitNo description
SuperFamilySSF541714.58E-223290IPR016177DNA-binding domain
PRINTSPR003673.0E-103243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-323289IPR001471AP2/ERF domain
PRINTSPR003673.0E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRRGRGTTAA TAAAANIASG SGSRNLTKEI RFRGVRKRPW GRFAAEIRDP LKKTRVWLGT  60
FDSAEDAARA YDAAARNLRG PKAKTNFPLS STPSYPQHHH QHQHHYHHLG FQQSPNDPHY  120
NPQLHPHQHH QPQRPTSSSL SSTVESFSGP RLSSAGPVVQ SSVAPGRHRR QHHPPPPPVL  180
PDDCHSDCDS SSSVIDDGDI VSSSFRKPLP FDLNLPPLDE VDFAGDDFQS TVLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-203289361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-203289664ATERF1
3gcc_A1e-203289664ATERF1
5wx9_A6e-202288472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270056.11e-172PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803399e-50ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1U8AQD81e-171A0A1U8AQD8_NELNU; ethylene-responsive transcription factor 3-like
STRINGXP_010270056.11e-172(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-27ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]