PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013864-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 315aa    MW: 33692.8 Da    PI: 8.4918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013864-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-14112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
    NNU_013864-RA 112 PWTEEEHRTFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 156
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.04898161IPR017930Myb domain
SMARTSM007172.9E-10109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-12111155IPR009057Homeodomain-like
SuperFamilySSF466891.87E-16111162IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17111160IPR006447Myb domain, plants
PfamPF002499.4E-12112156IPR001005SANT/Myb domain
CDDcd001679.33E-10112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRKCSHCGN MGHNSRTCTN YRASAVGGGL KLFGVQLDLS SSSSLALKKS FSMDCLPSTS  60
SASSSSSSSL SSSSRVVADE NSDKISNGYL SDGLIGRTQE RKKAVCGWLG VPWTEEEHRT  120
FLAGLEKLGK GDWRGISRNF VTTRTPTQVA SHAQKYFLRQ ANLNKKKRRS SLFDMVGSSN  180
VTDQHVNSTS FKSRDPSVAC GLLPVLSPAL NIATASYSEV HHQDATLPLL DLNALEQRTE  240
VGGEDTNFFK LPSCFHLTPV GPNESLDSEP RAATVTNAGV QNASPDLELT LAVQSPMDQS  300
KSSPAPILIG PISVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266999.10.0PREDICTED: transcription factor MYB1R1-like isoform X1
SwissprotQ7XC573e-52MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1U8AUX20.0A0A1U8AUX2_NELNU; transcription factor MYB1R1-like isoform X1
STRINGXP_010266999.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-54MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]