PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013581-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 200aa    MW: 22259.2 Da    PI: 9.2598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013581-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-203586156
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +l+g+
  NNU_013581-RA 35 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPTPEMAARAYDVAAYCLRGH 86
                   68*****887.**********843...6**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-143586IPR001471AP2/ERF domain
PROSITE profilePS5103224.3953693IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-233694IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-323694IPR001471AP2/ERF domain
SMARTSM003806.8E-383699IPR001471AP2/ERF domain
CDDcd000182.07E-333794No hitNo description
PRINTSPR003675.8E-133748IPR001471AP2/ERF domain
PRINTSPR003675.8E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MENPSYPEED STTPSPDTGL NLPKSDIKSG GTRHPVYRGV RKRRWGKWVS EIREPRKKSR  60
IWLGSFPTPE MAARAYDVAA YCLRGHKALL NFPEEVELLP RPSTCTARDI QTAAAAAAAA  120
AAIMSGSKKT NTNNEKSDSD GDGDDFWAEI ELPELINFGT QRSSPTIPYV VALMHPSKVQ  180
INPLRYSYAL LLVYYRISSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-213198977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266557.11e-101PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI22e-54ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1U8AUH11e-100A0A1U8AUH1_NELNU; ethylene-responsive transcription factor ERF023-like
STRINGXP_010266557.11e-101(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]