PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012883-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 286aa    MW: 32649.5 Da    PI: 5.4223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012883-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-202978255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  NNU_012883-RA 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                   69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.16E-322888No hitNo description
SMARTSM003807.7E-382992IPR001471AP2/ERF domain
PfamPF008472.6E-132978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.552986IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-212987IPR016177DNA-binding domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESYRKGPLK PWKKGPARGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLQP SNCFNPPDKS QKFKWFPSKN FLSMFPSCGL  120
LNVNAQHTVH VIHQRLQELK WNSSTLNQLP SSSSSTFDMK SELWITDDKS YVENSVVNQE  180
EVVLSSENPV LVSHEEKPQL DLNEFLQKLG ILKEERRLDS SDTPESFPLP EYLPEDDEQA  240
AFGEQTFNWD SLVEIHGLGG HQGAVDNGLQ VDIHEELTFP SSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265763.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX52e-83DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1U8ARV90.0A0A1U8ARV9_NELNU; dehydration-responsive element-binding protein 2F-like
STRINGXP_010265763.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-71ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]