PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012866-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 82aa    MW: 9613.87 Da    PI: 10.3501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012866-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-18650250
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50
                   +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a+
  NNU_012866-RA  6 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAA 50
                   69******9.**********8.....334********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-31565No hitNo description
Gene3DG3DSA:3.30.730.108.4E-34663IPR001471AP2/ERF domain
PfamPF008476.8E-11650IPR001471AP2/ERF domain
PROSITE profilePS5103221.008663IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-21665IPR016177DNA-binding domain
SMARTSM003801.3E-38669IPR001471AP2/ERF domain
PRINTSPR003673.4E-11718IPR001471AP2/ERF domain
PRINTSPR003673.4E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MARQQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTFETAE DAARAYDEAA WLICGPRAKT  60
NFPYDASNNS QVELYQLKSG FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18263163ATERF1
3gcc_A4e-18263163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265482.16e-50PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-39ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U8ART81e-48A0A1U8ART8_NELNU; ethylene-responsive transcription factor ERF003-like
STRINGXP_010265482.12e-49(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]