PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012185-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 176aa    MW: 19457.7 Da    PI: 4.3918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012185-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.38e-132441055
            AP2 10 kkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++g+Wv+eI++      k+ r++lg+  t+e+Aa+a++ a+++++g
  NNU_012185-RA  2 RSWGKWVSEIHEtR----KKSRIWLGTLPTPEMAARAHDVAALAIKG 44
                   57**********33....36***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-23153IPR001471AP2/ERF domain
CDDcd000186.39E-25154No hitNo description
PROSITE profilePS5103217.807152IPR001471AP2/ERF domain
SMARTSM003801.5E-23158IPR001471AP2/ERF domain
PfamPF008471.4E-8244IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-15253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MRSWGKWVSE IHETRKKSRI WLGTLPTPEM AARAHDVAAL AIKGNSAFLN FPELAHELPR  60
PASLSHKDIQ AAAAKAAAAA FDKQPASCEV ETEDQGERSQ SEFPISNSPT PIITSDDTRG  120
EFSMFPSTDE DLLFDLPDLV LDHTTTPNIF DFSSSLMSPT AANFGLQMDE TFLFWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-122522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264428.11e-102PREDICTED: ethylene-responsive transcription factor ERF035-like
SwissprotQ8LBQ76e-38ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8AFJ11e-101A0A1U8AFJ1_NELNU; ethylene-responsive transcription factor ERF035-like
STRINGXP_010264428.11e-102(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.15e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]