PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011665-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 257aa    MW: 28350.1 Da    PI: 5.3659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011665-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2090139255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  NNU_011665-RA  90 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 139
                    59*******.**********82....48**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3590153IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2290148IPR016177DNA-binding domain
PfamPF008476.2E-1490139IPR001471AP2/ERF domain
PROSITE profilePS5103225.10690147IPR001471AP2/ERF domain
CDDcd000181.12E-3390147No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3290147IPR001471AP2/ERF domain
PRINTSPR003673.4E-1291102IPR001471AP2/ERF domain
PRINTSPR003673.4E-12113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVSALTHVLS DGNATDFAHG LQLSLPTSTA AATEATSRVL PLPEAESCHL CRIDGCLGCN  60
FFDTSSSSSS ARQAAATDKK GKKRRKDKKN YRGVRQRPWG KWAAEIRDPR RAARVWLGTF  120
NTAEEAARAY DKAAIDFRGA RAKLNFPFPD DIHNTSSSST SAQNQNNFDT QGQQQQREIK  180
PVVETPHYDH QPSFLSQTET VVVAPENQMN RQENDDFWDI VVEDHLEDLV LLDFSGEEAP  240
TSSASGGTGT FDGSQWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2389148464ATERF1
3gcc_A3e-2389148464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263553.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1U8AMB70.0A0A1U8AMB7_NELNU; ethylene-responsive transcription factor ERF109-like
STRINGXP_010263553.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-29redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]