PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011055-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family G2-like
Protein Properties Length: 300aa    MW: 33063 Da    PI: 6.2987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011055-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.15.4e-30154207155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  NNU_011055-RA 154 RPRLVWTPQLHKRFVDVVSHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 207
                    59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-19151211IPR009057Homeodomain-like
PROSITE profilePS512949.887151210IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-30153212IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23155207IPR006447Myb domain, plants
PfamPF002499.2E-8157206IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGEEVQTTPF DDGLSCGDEA RVQEWEVGLP TADDLTPLSQ SLIPVELASA FSITPEPCRS  60
IIDVNRASHN TLSSLSRQSS QSISSNHLKS LPSFTEDRTR DAMVIEGDDN DAGFSAKDGS  120
DSRKVRRPES AEEADSALRT ENSMDDHSAR TLKRPRLVWT PQLHKRFVDV VSHLGIKNAV  180
PKTIMQLMNV EGLTRENVAS HLQKYRLYLK RMQGLSNDEG PSSSDHLFAS TPVPQSLHEP  240
SPHGHGHMPL PMPYPPPMMP IPVLGVTHAH GHMGIPVGNP AATAFHGFES HPYNMFREKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-34154210157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262563.10.0PREDICTED: transcription factor PCL1-like
SwissprotQ9SNB42e-79PCL1_ARATH; Transcription factor LUX
TrEMBLA0A1U8AB720.0A0A1U8AB72_NELNU; transcription factor PCL1-like
STRINGXP_010262563.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-74G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]