PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010879-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 143aa    MW: 16179 Da    PI: 6.1316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010879-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-182272255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +++GVr ++ +g+++AeIrd +    + +r +lg+f taeeAa+a+++a+ +++g
  NNU_010879-RA 22 RHRGVRKRP-WGKFAAEIRDSTR---HgARLWLGTFNTAEEAARAYDRAAYAMRG 72
                   68*******.**********422...25*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-172281No hitNo description
SMARTSM003802.7E-322286IPR001471AP2/ERF domain
PROSITE profilePS5103223.1822280IPR001471AP2/ERF domain
PfamPF008475.2E-142272IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-302382IPR001471AP2/ERF domain
PRINTSPR003671.3E-102334IPR001471AP2/ERF domain
PRINTSPR003671.3E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAEEPADHQG RMKEGEEERE VRHRGVRKRP WGKFAAEIRD STRHGARLWL GTFNTAEEAA  60
RAYDRAAYAM RGPLAILNFP DEYKLPRHDC LSSSYSSSVL GSSSSSEYES AKSGNGKQII  120
ELECLDDKLL EDLLDFEGKN KKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-312212914114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262303.11e-102PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8A6Z61e-101A0A1U8A6Z6_NELNU; ethylene-responsive transcription factor ERF098-like
STRINGXP_010262303.11e-102(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-19ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]