PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010293-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 233aa    MW: 25774.9 Da    PI: 4.4585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010293-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-0914362447
                     HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                     W+ Ia++++ gRt++++k++w+++
    NNU_010293-RA 14 WAHIASHLP-GRTDNEIKNYWNSW 36
                     *********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.871141IPR017930Myb domain
SuperFamilySSF466897.41E-8544IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-111237IPR009057Homeodomain-like
CDDcd001675.30E-71437No hitNo description
PfamPF002499.1E-71436IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MIIYVGYVIQ SNMWAHIASH LPGRTDNEIK NYWNSWIKKK IRKPTTPRAM APSSVEFVQS  60
GYGLNQIGLV NQDLSTKPPV EDGLFSSSCP IFMFDIGTVD GLSSGNARVD IFHESAGLNS  120
DSWHQNYSTH EVQAIPPPPP SFTSGMESNY LPPLIENVET MVPMEDQACS MNENGEIGLE  180
CLQRQESSEW VDSHQYPGFL IWDHVEAQMC GDGVVPAASA NLGHILSSYP QSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261333.11e-164PREDICTED: transcription repressor MYB4
TrEMBLA0A1U8AH231e-162A0A1U8AH23_NELNU; transcription repressor MYB4
STRINGXP_010261333.11e-163(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-25myb domain protein 103