PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009935-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family G2-like
Protein Properties Length: 373aa    MW: 41278.9 Da    PI: 8.4591
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009935-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-333185155
        G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  NNU_009935-RA 31 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 85
                   79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3472888IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-322886IPR009057Homeodomain-like
SuperFamilySSF466891.74E-163086IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-233186IPR006447Myb domain, plants
PfamPF002491.2E-73383IPR001005SANT/Myb domain
PfamPF143799.7E-25127172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFHSKKPTMN AHDRPMCVQG DSGLVLTTDP KPRLRWTVEL HERFVDAVTQ LGGPDKATPK  60
TIMRVMGVKG LTLYHLKSHL QKFRLGKQPH KEFNDHAVKD GDRALELQRN AASSSGIMGR  120
SMNENVRLTE ALRMQMEVER RLHEQLEVQK HLQLRIEAQG KYLQNILEKA FQTLAGDQNM  180
ATASYKTVGN QGGVLDVSAM KDFGSPVNTF PSLQDLHIYG GEQLDLQSQM DRTSLDGFMP  240
AAANDNICLG KKRPSPYSSS SGKNPLIWAD DLRLQELGGT AAACLGPQED AFKGDHQLQI  300
SPSAIDNGPD MDSISDVYET KPIVSGDSMG EKKFEASAKL ERPSPRRATL PVERINPMIK  360
SSALTQGRNM PYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-193187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-193187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-193187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-193187157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260756.10.0PREDICTED: myb family transcription factor APL isoform X2
SwissprotQ9SAK51e-114APL_ARATH; Myb family transcription factor APL
TrEMBLA0A1U8A3720.0A0A1U8A372_NELNU; myb family transcription factor APL isoform X2
STRINGXP_010260754.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-116G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]