PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009642-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 237aa    MW: 25339.9 Da    PI: 9.5508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009642-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-202776255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  NNU_009642-RA 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 76
                   69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.81E-182784No hitNo description
PROSITE profilePS5103223.9332784IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-222785IPR016177DNA-binding domain
PfamPF008473.6E-142776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-322784IPR001471AP2/ERF domain
SMARTSM003801.1E-402790IPR001471AP2/ERF domain
PRINTSPR003674.8E-112839IPR001471AP2/ERF domain
PRINTSPR003674.8E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPRDKTNGV KGGNSAGNGN GNGKEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDAA AREFRGSKAK TNFPLPSESN NNQSPSQSST VESSSREGFS PAPITTPSTL  120
DRDLLHRGAG AGAVGGAAAG FAVRFPFQHH APSAVAGVLP TAHPLFFFDA IVRSENMTHH  180
RLRFDPAAAD YQAAFAGGGV QSDSDSSSVV DFHHHDEQSP RRRVLDLDLN LPPPEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-222489268ATERF1
3gcc_A8e-222489268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260299.11e-172PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW499e-53ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1U8AEQ21e-171A0A1U8AEQ2_NELNU; ethylene-responsive transcription factor 4-like
STRINGXP_010260299.11e-172(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-26erf domain protein 9