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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_009642-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25339.9 Da PI: 9.5508 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g NNU_009642-RA 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 76 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.81E-18 | 27 | 84 | No hit | No description |
PROSITE profile | PS51032 | 23.933 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-40 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPRDKTNGV KGGNSAGNGN GNGKEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 EEAARAYDAA AREFRGSKAK TNFPLPSESN NNQSPSQSST VESSSREGFS PAPITTPSTL 120 DRDLLHRGAG AGAVGGAAAG FAVRFPFQHH APSAVAGVLP TAHPLFFFDA IVRSENMTHH 180 RLRFDPAAAD YQAAFAGGGV QSDSDSSSVV DFHHHDEQSP RRRVLDLDLN LPPPEVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 24 | 89 | 2 | 68 | ATERF1 |
3gcc_A | 8e-22 | 24 | 89 | 2 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260299.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 9e-53 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1U8AEQ2 | 1e-171 | A0A1U8AEQ2_NELNU; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_010260299.1 | 1e-172 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 5e-26 | erf domain protein 9 |