PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009641-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 159aa    MW: 17308.6 Da    PI: 9.6093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009641-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20757256
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  NNU_009641-RA  7 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 57
                   69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.2E-35770IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22765IPR016177DNA-binding domain
CDDcd000182.66E-30764No hitNo description
PfamPF008472.5E-13756IPR001471AP2/ERF domain
PROSITE profilePS5103222.721764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-32764IPR001471AP2/ERF domain
PRINTSPR003674.4E-11819IPR001471AP2/ERF domain
PRINTSPR003674.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASREGHYRG VRKRPWGRYA AEIRDPWKKT RVWLGTFDTP EEAALAYDGA ARSLRGAKAK  60
TNFPPRSTGL SFDLNVPSDR WGCPPGGFVL GELLQTRVLK EASSDEGASS VKDVHVATEA  120
LPPEPASTAP SFFGLVKRGL SIDLNEPPPS TTMSPLCLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22766565ATERF1
3gcc_A4e-22766565ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260298.11e-113PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID63e-39ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A1U8ADL21e-111A0A1U8ADL2_NELNU; ethylene-responsive transcription factor 12
STRINGXP_010260298.11e-112(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-41ERF domain protein 12