PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008778-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 275aa    MW: 29959.5 Da    PI: 5.0776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008778-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1789137254
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++  +
  NNU_008778-RA  89 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTVK 137
                    69****998.**********843...6*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.15689146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3189147IPR001471AP2/ERF domain
PfamPF008475.3E-1289137IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2189147IPR016177DNA-binding domain
SMARTSM003802.9E-3589152IPR001471AP2/ERF domain
PRINTSPR003673.0E-1090101IPR001471AP2/ERF domain
CDDcd000184.93E-3190147No hitNo description
PRINTSPR003673.0E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEEPPIMGSE GQSSYSSTSC TTSSSSSSSS SSSSSTGASV FTEFNHTQKN STAATQKGSR  60
KAQENENGNE SRKRQKSSSS RSNDGKHPTY RGVRMRNWGK WVSEIREPRK KSRIWLGTFP  120
TPEMAARAHD VAALTVKGKS AYLNFPERAH ELPRPASSSP KDIQAAAAKA AAATFGEHPS  180
RSSHEADAEG EPSEPEPESL PITHSPSLTT TSADTQEFSV SPSTDEEDSL FFDLPDLFLD  240
LSSNQIDRFG FCSPLLSPGE ADFGFQMEEP FLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1779146472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258834.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8AAY50.0A0A1U8AAY5_NELNU; ethylene-responsive transcription factor ERF039-like
STRINGXP_010258834.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]