PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008734-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 309aa    MW: 33296.3 Da    PI: 7.3485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008734-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19163213255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  NNU_008734-RA 163 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAAMAYDRAAYRMRG 213
                    8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32162221IPR001471AP2/ERF domain
CDDcd000182.10E-31162221No hitNo description
SMARTSM003802.3E-38163227IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-23163223IPR016177DNA-binding domain
PfamPF008471.6E-13163213IPR001471AP2/ERF domain
PROSITE profilePS5103224.276163221IPR001471AP2/ERF domain
PRINTSPR003675.6E-11164175IPR001471AP2/ERF domain
PRINTSPR003675.6E-11187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFGINGDESN SAMLESIRRH LLDESELSAN LQVNCPARNP SEGPVYCRSS SFSSLFPCLT  60
ENWGDLPLKE DDSEDMVVYG MLRDAVSVGW VPSLGQQGMT VTPQTQPSAT STFSLTEKPV  120
KLEPQESLPE PPMATAAPAI SATSVVRQEK SIPASPAPAK GKHYRGVRQR PWGKFAAEIR  180
DPAKNGARVW LGTFETAEDA AMAYDRAAYR MRGSRALLNF PLRIGSNDPE PVRVTAKRAS  240
PEPSSSSSSS PSPSYSSSSL SDNGSPKRRR RGVVPSAPAA AETRLETTSL SEVFQVGTPL  300
LRGEQLLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-41159228170ATERF1
3gcc_A2e-41159228170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258782.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404799e-88ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A1U8A2030.0A0A1U8A203_NELNU; ethylene-responsive transcription factor 2-like
STRINGXP_010258782.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-67ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]