PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007422-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 531aa    MW: 53950.4 Da    PI: 7.675
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007422-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.92.9e-411232302115
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                    ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++        
  NNU_007422-RA 123 TTTKRSSKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSSLSAP-------A 211
                    5789*****************************************************************9997777777777733333.......3 PP

            TCP  97 skksqksaasalnlakesr 115
                    sk++++s + al+la++ +
  NNU_007422-RA 212 SKSAPHSFHGALALAHHPH 230
                    3333444444444444333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-38128222IPR005333Transcription factor, TCP
PROSITE profilePS5136928.418129183IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MESTTQSQGS KQQQQQQQQQ QSSPLQLVPF ESRSGPGPGP GPGPGPFMGS ISIQAGAGSG  60
GGGAGGGSSP NSTSTTSTTT TPPQLVDASL AISTKSDASR SGQLVDPSKK QQQQLTIATT  120
TTTTTKRSSK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI  180
IAATGTGTIP ANFSTLNVSL RSSGSSLSAP ASKSAPHSFH GALALAHHPH HYDESGEPAR  240
RLLGGGDSGI SHTAMLGFHH PHHSHLLTAD QIGEALPGGG SGAGGGSGGD AGDNYSRKRF  300
REDLFKEESQ PQQEAGDASS PSASKPLRTG EPGGGSVASA AAAAAAGLIR PSNMMPATAM  360
WAMAPAPSSA GGAFWMLPVT AGSTVPTGVA AAGVGPGPSE PSLWTFPAAG GQYRATTIPT  420
ASGNTLQAPL HFMPRINLSG GIEFQGGRVG ALPLGSMLLQ QPSAAGASQH LGLGVSETNL  480
GMLAALNAYN RGGGGLSMNS EQHQSMDHHQ QVHPQQPQGT DSGDENPNSS Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256467.10.0PREDICTED: transcription factor TCP8
RefseqXP_010256468.10.0PREDICTED: transcription factor TCP8
RefseqXP_010256469.10.0PREDICTED: transcription factor TCP8
TrEMBLA0A1U7ZSI50.0A0A1U7ZSI5_NELNU; transcription factor TCP8
STRINGXP_010256467.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-40TCP family protein