PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006850-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 406aa    MW: 42855.3 Da    PI: 5.4995
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006850-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.39.2e-37123216287
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsss 87 
                    +g++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++         + ss s +++ ++
  NNU_006850-RA 123 PGRRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvggtlkiPTTSSTSDGDTTKK 216
                    58999***********************************************************888884442222222111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-30128214IPR005333Transcription factor, TCP
PROSITE profilePS5136927.141129183IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MASIQKQEIE EEDERGTTDL TMNGGGGEVP VDNGNNVEDK MESSDPSTTE SEPPPPATSA  60
PSQPSSTAVP LVSLKEEPTE TEPELEEQPP PIGVVPVAMQ MQMQMPMSMP MPMPVQIRRT  120
AVPGRRASTK DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGETIR WLLEHAEPAI  180
IAATGTGTVP AIAMSVGGTL KIPTTSSTSD GDTTKKKRKR SASSEYYEVN DGVSISSGLA  240
PIGATAVAAA PQGLVPMWAV SSGGRVIPSN AVAAGTFWMI PPTTAIAGPS NQPQLWTFPP  300
AGTPLINISA RPISSFISAM QPGISIATPV EVQAPSCVSN NATTSAVSST GAKAAKTSTM  360
APSTSSTTTT QMLRDFSLEI YDKQELQFMG RSANNRQHDQ TTSSKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220KKRKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255575.10.0PREDICTED: transcription factor TCP9
SwissprotO646473e-79TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1U7ZTX90.0A0A1U7ZTX9_NELNU; transcription factor TCP9
STRINGXP_010255575.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-62TCP family protein