PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006827-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 229aa    MW: 25512.4 Da    PI: 4.9953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006827-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1961111155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  ++rWv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+++l+g
  NNU_006827-RA  61 PVYRGVRRRN-SNRWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 111
                    68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1461111IPR001471AP2/ERF domain
PROSITE profilePS5103222.36662119IPR001471AP2/ERF domain
SMARTSM003801.6E-2862125IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2162121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-3262121IPR001471AP2/ERF domain
PRINTSPR003674.5E-86374IPR001471AP2/ERF domain
CDDcd000187.08E-3163121No hitNo description
PRINTSPR003674.5E-885101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDFLSQYSNS YPFLSDFPSA SSPMSDSSSH PATHSDEEIM LASSHPKKRA GRKKFRETRH  60
PVYRGVRRRN SNRWVCEVRE PNKKSRIWLG TFPTAEMAAR AHDVAALALR GRSACLNFAD  120
SAWRLPVPVS TDAKDIQKAA AEAAEAFRPP QDSDTMSNED VKADNTAPMS MSPEPDNEEM  180
YVDEEAIFGM PGLLANMAEG LLLSPPHCSQ QQWDDVESDA DVSLWSYSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14601181271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255545.11e-170PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ933e-79DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1U7ZQ671e-169A0A1U7ZQ67_NELNU; dehydration-responsive element-binding protein 1B-like
STRINGXP_010255545.11e-169(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.11e-67C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]