PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006826-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 236aa    MW: 25237.3 Da    PI: 4.4287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006826-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-1671119255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  NNU_006826-RA  71 IYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALKG 119
                    69***9.55.6*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-1670129No hitNo description
PfamPF008478.6E-1070119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2671128IPR001471AP2/ERF domain
PROSITE profilePS5103220.07371127IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1871128IPR016177DNA-binding domain
SMARTSM003801.2E-2771133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MHLGDQQQPP PNPSLPPPPM PFPSTQTSVN PVPVDQFPEH SRSNPTSDPP SPKMTMSSSA  60
APPPIAGKHP IYRGIRCRSG KWVSEIREPR KTTRIWLGTF PTPEMAAAAY DVAALALKGN  120
DSVLNFPETI SSYPIPASAS PSDIRAAAAA AAASRLPKPE SIDDPVPLLG QSGDVDTQST  180
RPTTAEEFID EEALFEMPKL LANMAEGMLL SPPRIDSGIS DDSPENSDGE SLWSYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1465131876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255544.11e-169PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U7ZN461e-168A0A1U7ZN46_NELNU; ethylene-responsive transcription factor ERF027-like
STRINGXP_010255544.11e-169(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-43ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]