PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005476-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 92aa    MW: 10542.9 Da    PI: 9.8418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005476-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79e-16756255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr +  +g+WvAeIr+p   + r  r +lg+f  a eA  a+ +a k+++g
  NNU_005476-RA  7 TYRGVRKRA-WGKWVAEIREP---N-RgSRLWLGTFSNALEASLAYNEATKAMYG 56
                   69****887.**********8...3.35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.704764IPR001471AP2/ERF domain
SMARTSM003808.3E-28770IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-19765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-28766IPR001471AP2/ERF domain
PfamPF008479.4E-10756IPR001471AP2/ERF domain
PRINTSPR003675.4E-9819IPR001471AP2/ERF domain
CDDcd000187.43E-25866No hitNo description
PRINTSPR003675.4E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MEPTLPTYRG VRKRAWGKWV AEIREPNRGS RLWLGTFSNA LEASLAYNEA TKAMYGRCVR  60
LNFPESSASM ESSYLATTSS SYSWRTELIL RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-15864360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-15864663ATERF1
3gcc_A2e-15864663ATERF1
5wx9_A2e-158651573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257031.11e-29PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_010264771.19e-30PREDICTED: dehydration-responsive element-binding protein 2A
SwissprotQ8LFR29e-27DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLQ9LEM72e-30Q9LEM7_CATRO; AP2-domain DNA-binding protein
STRINGXP_010257031.16e-29(Nelumbo nucifera)
STRINGXP_010264771.13e-29(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-28DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]