PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004953-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 198aa    MW: 21885.4 Da    PI: 4.9721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004953-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-163785355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GVr+++ +gr+v+eIr p++   ++r++lg+f ++e+Aa+a++ a+  l+g
  NNU_004953-RA 37 YRGVRRRS-WGRYVSEIRLPKK---KTRIWLGSFLSPEMAARAYDSAAFFLKG 85
                   9****887.**********854...6**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.4173693IPR001471AP2/ERF domain
SMARTSM003801.9E-333699IPR001471AP2/ERF domain
PfamPF008478.0E-103785IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-193795IPR016177DNA-binding domain
CDDcd000181.57E-273795No hitNo description
PRINTSPR003671.6E-113748IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-293795IPR001471AP2/ERF domain
PRINTSPR003671.6E-117595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSAPEDRLDR FETATNDEES PSAGYTKNRP RQSALPYRGV RRRSWGRYVS EIRLPKKKTR  60
IWLGSFLSPE MAARAYDSAA FFLKGQSATL NFPESAGSLP RPLSSSRKDI QTAAAKAALN  120
SVANRELLEP GRAEVEPSSC SGSASEVWWD LDQELASVFD DVREAPLHSP LRLDSIAGEF  180
LSGEVIDENG FLLSSFEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1737941573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252352.11e-141PREDICTED: ethylene-responsive transcription factor ERF036-like
SwissprotQ8LBQ71e-31ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U7ZH791e-139A0A1U7ZH79_NELNU; ethylene-responsive transcription factor ERF036-like
STRINGXP_010252352.11e-140(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.18e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]