PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003917-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 275aa    MW: 29757.3 Da    PI: 4.3817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003917-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-193987355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  NNU_003917-RA 39 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 87
                   56******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7453895IPR001471AP2/ERF domain
SMARTSM003803.4E-3438101IPR001471AP2/ERF domain
CDDcd000184.42E-303894No hitNo description
PRINTSPR003673.4E-83950IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-293995IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-213996IPR016177DNA-binding domain
PfamPF008476.6E-124187IPR001471AP2/ERF domain
PRINTSPR003673.4E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDFTNPTTNP SSSSSSSSPM LFQEKRSKRK QQQDTTGRFL GVRRRPWGRY AAEIRDPTTK  60
ERHWLGTFDT AEEAALAYDR AARSMRGSRA RTNFVYSDLP PGSSITSIIS PDETQHDLSA  120
ALLLPSPQTE PTTQLYFTKD SGTATHFSGE FPAGDSWVAA NVSESISSFA GVVDGLASNQ  180
FYDSTDLPPF PSDVSSCNAA ASGYDMGQAV WPDTTNYVGY SDQTMAGFDS GSSSCFSFDS  240
NEFVHSPLFG QMPPVSDATP SVSDGFDLGS SGYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-193994359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250477.20.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1U7ZQM30.0A0A1U7ZQM3_NELNU; ethylene-responsive transcription factor LEP-like
STRINGXP_010250477.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-28ERF family protein