PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003368-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 344aa    MW: 37085.6 Da    PI: 7.1701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003368-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
    NNU_003368-RA 103 PWTEEEHRLFLMGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKY 147
                      8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.96696152IPR017930Myb domain
SuperFamilySSF466896.43E-1798153IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1899151IPR006447Myb domain, plants
SMARTSM007171.2E-11100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12100146IPR009057Homeodomain-like
PfamPF002491.1E-11103147IPR001005SANT/Myb domain
CDDcd001678.50E-10103148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPM RGGLKLFGVR LTDGSIKKSA SMGNLSSAHY YSSSSAAASA  60
NSSSPPSDPL RDPTPVADGY VSDDPVHASC SSNCRSERKK GVPWTEEEHR LFLMGLQKLG  120
KGDWRGIARN FVMSRTPTQV ASHAQKYFIR QSNSTRRKRR SSLFDMVPDM SIDPTTVTEE  180
QSLLHSSQAG ESENVNLLPP LHLSLDQECE PMETTSDETV KADEGVTSSN ILPMIPTLFP  240
AYLPAAFPFW PPSLAPAVGE NVGEISHHQV LKPTPIHSKD PVNVDELVGL STLSLGDVAT  300
GRMEPSALTL QLIGAPSKQS AFHANPPISR SDLSNSGSSA IHAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249506.10.0PREDICTED: uncharacterized protein LOC104592058
SwissprotQ7XC571e-105MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1U7Z7Y80.0A0A1U7Z7Y8_NELNU; uncharacterized protein LOC104592058
STRINGXP_010249506.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-94MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]