PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002386-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 229aa    MW: 24819.1 Da    PI: 7.4559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002386-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1659108255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr + k g+Wv+e+r+p   +k+ r++lg+f  +e+Aa+a++ a+++l+g
  NNU_002386-RA  59 IYRGVRER-KGGKWVCEVREP---NKKSRIWLGTFPCPEMAARAHDVAALALRG 108
                    69***955.59******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.84E-2858118No hitNo description
PfamPF008471.4E-1258108IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1959117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-2959118IPR001471AP2/ERF domain
PROSITE profilePS5103221.44359116IPR001471AP2/ERF domain
SMARTSM003805.1E-2759122IPR001471AP2/ERF domain
PRINTSPR003671.1E-76071IPR001471AP2/ERF domain
PRINTSPR003671.1E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDIEESSASS SSSSEAADAT QLPSDASSRS PPEVSTPAVV VGHKRKAGRK KFRETRHPIY  60
RGVRERKGGK WVCEVREPNK KSRIWLGTFP CPEMAARAHD VAALALRGKS APLNFLDSAW  120
LLPRAKSSSA TDIQIAALEA AEAFRPVKSA SACTTSSTSS AYLPQMVINR TKKVPEPSTT  180
FLDEEALFNM PGLIDSMAEG MLLTPPAMQN GLNFDDVDCH VDLTLWSDV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243826.11e-168PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ934e-63DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1U7YTZ41e-167A0A1U7YTZ4_NELNU; dehydration-responsive element-binding protein 1B-like
STRINGXP_010243826.11e-168(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-51C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]