PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002048-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 290aa    MW: 32037.3 Da    PI: 5.0558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002048-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-21114163255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f+taeeAa+a+++a+ +++g
  NNU_002048-RA 114 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFDTAEEAARAYDKAAIEFRG 163
                    59*******.**********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-15114163IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-33114171IPR001471AP2/ERF domain
SMARTSM003806.5E-38114177IPR001471AP2/ERF domain
PROSITE profilePS5103225.567114171IPR001471AP2/ERF domain
CDDcd000184.95E-34115171No hitNo description
PRINTSPR003672.0E-12115126IPR001471AP2/ERF domain
PRINTSPR003672.0E-12137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVTNNINELE DLGQYPSPSQ REREFSIMVS ALIHVLSGAK ATSPSTSEPP PPSSILPLPE  60
AYTCGLCGIH GCLGCNFFAS SSSLSSSMQQ QESTSAAASD SSKKGKKRKK GNKNYRGVRQ  120
RPWGKWAAEI RDPRRAARVW LGTFDTAEEA ARAYDKAAIE FRGARAKLNF PFPDNTAGTS  180
SAENQNLDTQ QQQQHLQQQQ QEEEKPYTTH STACMQQESF LSPPETVELA PETINKQENF  240
WDLVGDDQLA FEEWMFKLVN DSSSGLPTFT ASGDTATFDV SQRQRDLSPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24113172161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110GKKRKKG
2105109KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269994.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-40EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1U8AQ890.0A0A1U8AQ89_NELNU; ethylene-responsive transcription factor ERF109-like
STRINGXP_010269994.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-23ERF family protein
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]