PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000986-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 400aa    MW: 44154.8 Da    PI: 7.9738
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000986-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.39.9e-33492153134
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas.nsssg........ 88 
                    g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ ++ +++ +c  ++s ++s+  n s++        
  NNU_000986-RA  49 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLQMPPN-FCqYPHSMVVSQXvNTSHPslasfvda 143
                    79*************************************************************77777.888444444444413333377788988 PP

            TCP  89 .........................kaaksaakskksqksaasalnlakesr...............akarararertrekmrikn 134
                                             +              ++ +  l+k+s+               ak ++ are  +ek +   
  NNU_000986-RA 144 nveyvkddtprsslskaefkigssvE--------------EEDQMVLSKSSSpywnnsisiippnkeAKCKEVARETATEKINWMR 215
                    89888888887555333333333321..............2223344444445566666666666667777778887666665544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3050210IPR005333Transcription factor, TCP
PROSITE profilePS5136931.00450108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MITNSREKDL QSKKEGNANE GKVSKGSSSS RQWSALKDPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLDA AKHEIDELPP LQMPPNFCQY  120
PHSMVVSQXV NTSHPSLASF VDANVEYVKD DTPRSSLSKA EFKIGSSVEE EDQMVLSKSS  180
SPYWNNSISI IPPNKEAKCK EVARETATEK INWMRKNDEQ ETTQEATEGD QCAQGSGHTS  240
YPRANHASSL PAGLLNNSMP PYNSYYHWEP SAGLSLSHHT GSHGYSSQAE DPHNYNVISL  300
SSSSLSLPTG SHQLLVYPSG TTPSFLPPFV TTSLECDPRQ MNHFQMLSSS SQNQPTNSLI  360
TPSLYSINAS TRPFQLSINP KLLHSQNNNG NQPNKGGSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1855109155Putative transcription factor PCF6
5zkt_B5e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260174.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_010260177.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1U8A5K30.0A0A1U8A5K3_NELNU; transcription factor TCP2-like
STRINGXP_010260168.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-46plastid transcription factor 1