PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000941-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 542aa    MW: 60696.2 Da    PI: 3.9082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000941-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07264311347
                      SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+e+++l+ ++v    + lG++ W+  +  ++  Rt k+++s+++++
    NNU_000941-RA 264 KWTEEDEQLFREVVfsnpASLGKNFWDNLSMVFP-YRTKKEIISYYFNV 311
                      8*************4444455666**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18206.4E-4232359IPR029058Alpha/Beta hydrolase fold
SMARTSM007172.2E-4261314IPR001005SANT/Myb domain
SuperFamilySSF466897.72E-5263312IPR009057Homeodomain-like
PfamPF002494.4E-6264311IPR001005SANT/Myb domain
CDDcd001671.98E-8264312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MLRLNSFVIM SSMVYKRPLV DEESYELACK HSRQLEYSNQ LASFVDIVPY NDMLQKPQSS  60
VGEGDLSKSE CKERLNVTIT ELSAGANEDF ETTVPVSASS LSWVTSSTSE EDSRSEAVVR  120
VSFSPDFSEP DFQARVLLHS EEVYSSFLDY PPRRLVSVGP DHQADIPAWG LQDNYCLGEP  180
TVEDDSDEKL MGNCVISMPD FEQSVCSSND FGYGRIDCSC PDRGSIRCVR QHVMEAREKL  240
RETLGQEKFV ELGFCDMGEE VASKWTEEDE QLFREVVFSN PASLGKNFWD NLSMVFPYRT  300
KKEIISYYFN VFMLRRRAEQ NRVDPMNIDS DNDEWQGSYY DGDEELGITE EDEDSVVESP  360
VGQDVLGYDQ EIHDEDFHED EDDGDEDEIS EHNDDSDLEA DRNCIGEGNE VSEACMGKSL  420
DCGFAIAAKL VEKNPQDGGE DHDVQDESCT SYECQTNSSS GLVDAGSVLQ ENKVEIGTSS  480
GGIGGGVENG YVMEPCDARV WDVGYFTGPK KDVEFLSTCN MIEEVFGEEA WINKGKDDKG  540
IS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259279.10.0PREDICTED: uncharacterized protein LOC104598763
RefseqXP_010259295.10.0PREDICTED: uncharacterized protein LOC104598763
RefseqXP_019053760.10.0PREDICTED: uncharacterized protein LOC104598763
RefseqXP_019053763.10.0PREDICTED: uncharacterized protein LOC104598763
RefseqXP_019053766.10.0PREDICTED: uncharacterized protein LOC104598763
RefseqXP_019053767.10.0PREDICTED: uncharacterized protein LOC104598763
TrEMBLA0A1U8Q5950.0A0A1U8Q595_NELNU; uncharacterized protein LOC104598763
STRINGXP_010259271.10.0(Nelumbo nucifera)