PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf39284g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 152aa    MW: 16949.6 Da    PI: 9.5148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf39284g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134567123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C + F ++  L  H++ H
  Niben101Scf39284g00001.1 45 FSCNYCRRKFYSSQALGGHQNAH 67
                              89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-64372No hitNo description
PROSITE profilePS5015711.0534572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSYEPNTALN LSLSRNELSF DLLFDQSSSS SSSSPLSPAD QPRVFSCNYC RRKFYSSQAL  60
GGHQNAHKLE RTLAKKSREL SSSLRPHSGW STNRNSGSDP TSPSHGHHGH AARFVTTELN  120
YGRREIMSYG SRKNGENVVQ EDFGQLDLSL RL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236390.11e-106PREDICTED: zinc finger protein 2
TrEMBLA0A1J6K1X01e-105A0A1J6K1X0_NICAT; Zinc finger protein 2
STRINGXP_009614282.17e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.15e-25zinc finger protein 2