PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf37331g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 388aa    MW: 42943.6 Da    PI: 10.2214
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf37331g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1636120186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p+
  Niben101Scf37331g00004.1  36 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsargNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPL 115
                               5*************************************54444445567788******************99984.....57*** PP

                  trihelix  82 fdqle 86 
                               + +l+
  Niben101Scf37331g00004.1 116 YPRLD 120
                               *9986 PP

2trihelix29.71.7e-091241793086
                  trihelix  30 lWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                               +We+v+k++++rg  ++spk   qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Niben101Scf37331g00004.1 124 HWEDVAKHVSARGNsTKSPKtltQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 179
                               7********666653566644449*****************99984.....57****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-2034120No hitNo description
PfamPF138378.7E-12124179No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDQEISNKDD FFPRNKQQNS HVATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK  60
LKGQDWEDVA KHVSARGNST KSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD  120
LLLHWEDVAK HVSARGNSTK SPKTLTQCKN KIESMKKRYR SESATAADAS SWPLYPRLDL  180
LLRGNNASAA STSLIPPPPP AVVEPPQPVT VLLPPPPAPV PPPPPPPPPM AVPIGNGGQN  240
SNGSNGVDRA AKEDTMDAKL SDNAAISDKN AMDTNSSTPA LYSDDNKSKS KNVKLRSMEK  300
KSKNKRKRAE GWEIGESIRL LAEVIVRSEQ ARMETMREIE RMRAEAEAKR GEMDLKRTEI  360
IANTQLEIAK LFASITKGVD PSLRIGRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778178.10.0PREDICTED: formin-binding protein 4
RefseqXP_016450737.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S3YFD00.0A0A1S3YFD0_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7WHQ60.0A0A1U7WHQ6_NICSY; formin-binding protein 4
STRINGXP_009778178.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-53sequence-specific DNA binding transcription factors