PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17872g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 268aa    MW: 30432.5 Da    PI: 6.8054
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17872g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-1424114186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                               +Wt++ + +L++a  ++  +l+rg l++++W++v++++     +  + +r+ +qCk++++ l+kryk +k+   + + + +s++p
  Niben101Scf17872g00007.1  24 CWTEEATWTLVDAWGRRFIELNRGFLRQTDWQQVADAVnalhgHTPKTRRTDIQCKNRIDTLKKRYKVEKAKIVESNGTLTSSWP 108
                               8*************************************99988888899******************9999998888788889** PP

                  trihelix  81 yfdqle 86 
                               +f++l+
  Niben101Scf17872g00007.1 109 FFERLD 114
                               ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2322115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGEITASSTH VTAPSRPLPF REDCWTEEAT WTLVDAWGRR FIELNRGFLR QTDWQQVADA  60
VNALHGHTPK TRRTDIQCKN RIDTLKKRYK VEKAKIVESN GTLTSSWPFF ERLDFLIGNS  120
GNKVTAMVVS PLPLPSRSPP MGVPLPSRRS TTTTAAAPMV TPVVLPQKRQ MPVFDDSYFR  180
RNYSAVAAAA AAEGGEEDYD DAEEEDMGMS EEKDGMRRLA KAIEKFGEIY ERVEEMKQRQ  240
MVELEKQRMQ FAKDLEKNPT NSILQNTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234266.11e-156PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1J6L6W01e-154A0A1J6L6W0_NICAT; Trihelix transcription factor asil2
STRINGXP_009757835.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-40sequence-specific DNA binding transcription factors