PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17336g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 223aa    MW: 24549.8 Da    PI: 8.5106
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17336g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.5e-302103197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++e++ r+ +Pv+Gavg++
  Niben101Scf17336g00010.1   2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFESCGRTVNPVHGAVGLL 86 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelall 97 
                               ++++++++q+++e++l 
  Niben101Scf17336g00010.1  87 WTGNWHVCQSAVETVLK 103
                               ***********998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6261107IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLSSVPESQR  60
PALFQSLLFE SCGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTALP  120
ESDSASKAND VNLFRSQSFN FRSKRKVMDE VAEDLDLGLS SGFPVKMTAT GGRMNRRTEK  180
RREATPSLNS DESDTTTLES GFMCHQNPQQ GQRDDTKLLR LFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233192.11e-160PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN112e-70LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1J6KXX91e-159A0A1J6KXX9_NICAT; Lob domain-containing protein 37
STRINGXP_009795798.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-73LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]