PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16457g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 357aa    MW: 37830.2 Da    PI: 5.0971
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16457g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.49.1e-3789185399
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++  +++ +  + ++ 
  Niben101Scf16457g00006.1  89 PPKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGTLKIPTTSPA 173
                               6799***********************************************************7777744421111111111111 PP

                       TCP  87 sgkaaksaakskk 99 
                                + ++ ++a++++
  Niben101Scf16457g00006.1 174 TN-SEGESATKRR 185
                               11.1111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3093173IPR005333Transcription factor, TCP
PROSITE profilePS5136927.34294148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MENKQNIEPE NDEVNDSKIL SADPLLGDSE EYTIKAVGQH VTDAEGVGPS SPSTDIVPLL  60
KEEPAENDLR GGTISVGLNM QLQKVENPPP KRSSKDRHTK VEGRGRRIRM PAACAARIFQ  120
LTRELGHKSD GETIRWLLER AEPAIIEATG TGTVPAIAVS VNGTLKIPTT SPATNSEGES  180
ATKRRKRAAN SEFYDVHEPS NFAPVAPIAP QSLLPVWAVA SGNGLVPTTG GTTFFMVQPP  240
PTSTTTIATA GPSYPPQLWA TPLYNIPGRP ISNFVSGISY VGVSAAEGQV SSSKSDGNVS  300
AMAPSSSSIG VTTTTTTSTT TTQMLRDFSL EIYDKKELQF MVGSGSSEND QTSSSKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231219.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT894e-70TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A314KIA90.0A0A314KIA9_NICAT; Transcription factor tcp19
STRINGXP_009780060.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-67TCP family protein