PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15543g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 235aa    MW: 25755.4 Da    PI: 6.0097
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15543g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.45.5e-292103197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ + v+Gavg++
  Niben101Scf15543g01002.1   2 SCNGCRVLRKGCSENCILRPCLqwietAESQGHATVFVAKFFGRAGLISFISAVPENQRPSLFRSLLYEAAGRTVNRVNGAVGLL 86 
                               6*********************9999777889***************************************************** PP

                    DUF260  81 lklqqqleqlkaelall 97 
                               ++++++++q+++e++l+
  Niben101Scf15543g01002.1  87 WTGNWHVCQAAVETVLR 103
                               ***********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1361107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAE SQGHATVFVA KFFGRAGLIS FISAVPENQR  60
PSLFRSLLYE AAGRTVNRVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PDFLGASLDI  120
DEASECADVF KVEHASQNNM QPMMQERCRF PEEASNVLQL ADLDLSLTPG FQSQKVFSHA  180
LPENRRPGTP SMNSEESGTT TCFESGTVIG NHQGNEPKLL SLFNLVAVVF FLIFC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801229.11e-155PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN116e-79LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1U7YPR81e-154A0A1U7YPR8_NICSY; LOB domain-containing protein 37
STRINGXP_009801229.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-81LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]