PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15049g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 353aa    MW: 39184.2 Da    PI: 9.9571
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15049g00021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.8e-1537120286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyf 82 
                               W++    +L+ea++ ++   +r+klk+++We+v+k++++rg  ++spk   qCk+k+e+++kry+ + +++ +      s++p++
  Niben101Scf15049g00021.1  37 WSEGAGSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARGNsTKSPKtltQCKNKIESMKKRYRSESATAADA-----SSWPLY 116
                               9999999******************************666653566654449*****************99984.....57**** PP

                  trihelix  83 dqle 86 
                                +l+
  Niben101Scf15049g00021.1 117 PRLD 120
                               9996 PP

2trihelix29.91.5e-091241793086
                  trihelix  30 lWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                               +We+v+k++++rg  ++spk   qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Niben101Scf15049g00021.1 124 HWEDVAKHVSARGNsTKSPKtltQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 179
                               7********666653566644449*****************99984.....57****9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1834120No hitNo description
PfamPF138377.5E-12124179No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDQEISNKDD FFPRNKQQNY HVAPGNNTSD RLKRDEWSEG AGSCLLEAYE AKWILRNRAK  60
LKGQDWEDVA KHVSARGNST KSPKTLTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD  120
LLLHWEDVAK HVSARGNSTK SPKTLTQCKN KIESMKKRYR SESATAADAS SWPLYPRLDL  180
LLRGNNASAA STSVIPPPPL AVVETPQPAT VPPPPPIPVP PPPPPPPPMD VPIGNGGQNS  240
NGSNGVDRAA KEDTMDTKLS DNAAISDKNA MDTNSSTPAL YSDDKSKSKN VKLRSMEKKS  300
KNKRKRAEGW EIGESIRLLA EVVVRSEQAR METMREIERM RAEAEAKRGE MEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593617.11e-158PREDICTED: trihelix transcription factor ASIL2
RefseqXP_016485756.11e-158PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_018624331.11e-158PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1S4BA191e-157A0A1S4BA19_TOBAC; trihelix transcription factor ASIL2-like
STRINGXP_009593617.11e-158(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-51sequence-specific DNA binding transcription factors