PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14233g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 193aa    MW: 22166.1 Da    PI: 10.6105
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14233g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-191059255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +g+++AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Niben101Scf14233g00008.1 10 HYRGVRQRP-WGKYAAEIRDPK----KaTRVWLGTFETAEAAAIAYDEAALNFKG 59
                              7********.**********94....45***********************9987 PP

2AP260.63.7e-1984133255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Niben101Scf14233g00008.1  84 HYRGVRQRP-WGKYAAEIRDPK----KaTRVWLGTFETAEAAAIAYDEAALNFKG 133
                               7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32968IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-211068IPR016177DNA-binding domain
PfamPF008472.3E-121059IPR001471AP2/ERF domain
PROSITE profilePS5103223.5121067IPR001471AP2/ERF domain
CDDcd000187.75E-171068No hitNo description
SMARTSM003809.4E-371073IPR001471AP2/ERF domain
PRINTSPR003674.1E-111122IPR001471AP2/ERF domain
PRINTSPR003674.1E-113349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3283142IPR001471AP2/ERF domain
PfamPF008472.3E-1284133IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2184142IPR016177DNA-binding domain
CDDcd000187.75E-1784142No hitNo description
PROSITE profilePS5103223.51284141IPR001471AP2/ERF domain
SMARTSM003809.4E-3784147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MIGNIERRRH YRGVRQRPWG KYAAEIRDPK KATRVWLGTF ETAEAAAIAY DEAALNFKGN  60
KAKLNFPERV LAKTEFGNIE RRRHYRGVRQ RPWGKYAAEI RDPKKATRVW LGTFETAEAA  120
AIAYDEAALN FKGNKAKLNF PERVLAKTEF GYLTTNTQQQ LINVSDANSQ LQHYPQLLRS  180
GNNNADSSIF KIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-259144163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-259144466ATERF1
3gcc_A1e-259144466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102008.13e-60PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotQ9FH541e-36EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1J6J6G24e-58A0A1J6J6G2_NICAT; Ethylene-responsive transcription factor erf114
STRINGXP_010513072.12e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]